Package: ef2
Title: Modelling Framework for the Estimation of Salmonid Abundance
Version: 2.0.0
Date: 2026-10-09
Authors@R: 
  c(
    person("Colin", "Millar", role = c("aut", "cre"),
                    email = "colin.millar@ices.dk"),
    person("Rob", "Fryer", role = "aut"),
    person("Iain", "Malcolm", role = "aut"),
    person("Ross", "Glover", role = "aut"),
    person("Marine Scotland Science", role = "cph"))
Description: Estimates capture probabilities and densities from
        multipass removal (electrofishing) data, following Millar et
        al. (2016) <doi:10.1016/j.fishres.2016.01.001>. Capture
        probability is modelled on the logit scale using fixed effects,
        penalised smooth terms and random effects, for example for
        between visit and between sample variation. The likelihood is
        computed using 'RTMB', with random effects integrated out using
        the Laplace approximation.
URL: https://faskally.github.io/ef2/, https://github.com/Faskally/ef2
BugReports: https://github.com/Faskally/ef2/issues
Depends: R (>= 4.1.0)
Imports: Matrix, RTMB, methods, mgcv
Suggests: testthat (>= 3.0.0)
License: MIT + file LICENSE
LazyData: TRUE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Repository: https://faskally.r-universe.dev
Date/Publication: 2026-10-28 20:35:42 UTC
RemoteUrl: https://github.com/faskally/ef2
RemoteRef: HEAD
RemoteSha: 4c92a7bd619253f1f05071d4e23c99c6d740ff14
NeedsCompilation: no
Packaged: 2026-10-28 23:29:27 UTC; root
Author: Colin Millar [aut, cre],
  Rob Fryer [aut],
  Iain Malcolm [aut],
  Ross Glover [aut],
  Marine Scotland Science [cph]
Maintainer: Colin Millar <colin.millar@ices.dk>