{ "_id": "6a5c8b819baadeef8ab51610", "Package": "ef", "Title": "Modelling Framework for the Estimation of Salmonid Abundance", "Version": "1.2.0", "Date": "2020-10-18", "Authors@R": "c(\nperson(\"Colin\", \"Millar\", role = c(\"aut\", \"cre\"),\nemail = \"colin.millar@ices.dk\"),\nperson(\"Rob\", \"Fryer\", role = \"aut\"),\nperson(\"Iain\", \"Malcolm\", role = \"aut\"),\nperson(\"Ross\", \"Glover\", role = \"aut\"),\nperson(\"Marine Scotland Science\", role = \"cph\"))", "Description": "A set of functions to estimate capture probabilities and\ndensities from multipass pass removal data.", "License": "MIT + file LICENSE", "LazyData": "TRUE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "Repository": "https://faskally.r-universe.dev", "Date/Publication": "2023-10-10 16:44:14 UTC", "RemoteUrl": "https://github.com/faskally/ef", "RemoteRef": "HEAD", "RemoteSha": "be649c27efc54f8176f404e6856fae04327141d6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-07-19 08:25:49 UTC", "User": "root" }, "Author": "Colin Millar [aut, cre],\nRob Fryer [aut],\nIain Malcolm [aut],\nRoss Glover [aut],\nMarine Scotland Science [cph]", "Maintainer": "Colin Millar ", "_user": "faskally", "_type": "src", "_file": "ef_1.2.0.tar.gz", "_fileid": "https://r2.ropensci.org/5cfd51d940e5309b3db5649ad35a1ff4ac11da9317148067a2d4680bc0b0d6fd", "_filesize": 118218, "_sha256": "5cfd51d940e5309b3db5649ad35a1ff4ac11da9317148067a2d4680bc0b0d6fd", "_expires": "2026-10-27T08:31:59.000Z", "_created": "2026-07-19T08:25:49.000Z", "_published": "2026-07-19T08:32:01.223Z", "_jobs": [ { "job": 88173843614, "time": 209, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "8440212622" }, { "job": 88173843649, "time": 176, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8440207289" }, { "job": 88173843596, "time": 169, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8440206654" }, { "job": 88173843606, "time": 157, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8440204511" }, { "job": 88173843607, "time": 302, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8440221161" }, { "job": 88173843610, "time": 294, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8440221812" }, { "job": 88173843621, "time": 144, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8440199661" }, { "job": 88173843626, "time": 244, "config": "macos-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8440214893" }, { "job": 88173596171, "time": 189, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8440181788" }, { "job": 88173843574, "time": 112, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8440198263" }, { "job": 88173843616, "time": 151, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8440204151" }, { "job": 88173843605, "time": 140, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8440201995" }, { "job": 88173843583, "time": 150, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8440203811" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777", "_status": "success", "_upstream": "https://github.com/faskally/ef", "_commit": { "id": "be649c27efc54f8176f404e6856fae04327141d6", "author": "Colin Millar ", "committer": "Colin Millar ", "message": "fixed README and tests\n", "time": 1696956254 }, "_maintainer": { "name": "Colin Millar", "email": "colin.millar@ices.dk", "login": "colinpmillar", "description": "", "uuid": 1502848 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "TMB", "role": "Depends" }, { "package": "TMB", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Matrix", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "mgcv", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "faskally", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "colinpmillar", "count": 81, "uuid": 1502848 }, { "user": "iainmalcolm", "count": 27, "uuid": 20435495 } ], "_userbio": { "uuid": 11422870, "type": "organization", "name": "Faskally", "followers": 0, "description": "R packages developed at the Freshwater Fisheries Laboratory, Faskally" }, "_downloads": { "count": 289, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ef" }, "_devurl": "https://github.com/faskally/ef", "_searchresults": 10, "_topics": [ "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ef.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_realowner": "colinpmillar", "_cranurl": false, "_releases": [ { "version": "1.2.0", "date": "2020-11-03" } ], "_exports": [ "as.gam", "BICadj", "efp", "invlogit", "logit", "overdispersion", "transpar" ], "_datasets": [ { "name": "ef_data", "title": "Counts of salmon fry and parr from electrofishing.", "object": "ef_data", "class": [ "data.frame" ], "fields": [ "siteID", "year", "date", "EFpasscount", "pass", "species", "lifestage", "count", "area" ], "rows": 90, "table": true, "tojson": true } ], "_help": [ { "page": "ef-package", "title": "Modelling Framework for the Estimation of Salmonid Abundance in Scottish Rivers", "topics": [ "ef-package", "ef" ] }, { "page": "as.gam", "title": "Coversion of an efp fit to a gam fit for plotting", "topics": [ "as.gam" ] }, { "page": "BICadj", "title": "Adjusted BIC function", "topics": [ "BICadj" ] }, { "page": "ef_data", "title": "Counts of salmon fry and parr from electrofishing.", "topics": [ "ef_data" ] }, { "page": "efp", "title": "Estimate capture probabilites from electrofishing data", "topics": [ "efp" ] }, { "page": "invlogit", "title": "Inverse logistic transformation", "topics": [ "invlogit" ] }, { "page": "logit", "title": "Logistic transformation", "topics": [ "logit" ] }, { "page": "overdispersion", "title": "Estimating overdispersion", "topics": [ "overdispersion" ] }, { "page": "transpar", "title": "Utility function to convert parameters to probabilities", "topics": [ "transpar" ] } ], "_readme": "https://github.com/faskally/ef/raw/HEAD/README.md", "_rundeps": [ "cli", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "mgcv", "nlme", "pillar", "pkgconfig", "R6", "Rcpp", "RcppEigen", "rlang", "tibble", "tidyselect", "TMB", "utf8", "vctrs", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1.6989700043360187, "_indexed": false, "_nocasepkg": "ef", "_universes": [ "faskally" ], "_indexurl": "https://colinpmillar.r-universe.dev/ef", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-07-19T08:29:11.000Z", "distro": "resolute", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/117f2a080e3495e4b7dcb22cdb8108654c0e4e1ce1c9370f9d050eb9a4709089", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-07-19T08:28:25.000Z", "distro": "resolute", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/520b4814c1e2b11ca0f1d8275ce0a7a8eadf153ce6f7959cee28e9d85b33baee", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.1", "os": "linux", "version": "1.2.0", "date": "2026-07-19T08:28:30.000Z", "distro": "resolute", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/447822d65e0d3844c4d0d4430cd7c8c7297d97d5e884a179a73e18bc28e0c8e7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.1", "os": "linux", "version": "1.2.0", "date": "2026-07-19T08:28:16.000Z", "distro": "resolute", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/1e1bd0855ee0b1850cdfacb78567537bd9fc95980f249d1dd417b689afac52d4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-07-19T08:29:40.000Z", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/0d6087b1bb845d9f7ab5f24561daa348476e48a19f85221fbd3685d437bc57ff", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-07-19T08:29:44.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/26a542fc378bc77862d61af6c9880944450f51155d1a1b313ca6624586d153aa", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.1", "os": "mac", "version": "1.2.0", "date": "2026-07-19T08:27:54.000Z", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/1eb2a655f227bcf70d0cacfa67c2ca1052bb4d20a76ed2801b87d82f73d2a912", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.1", "os": "mac", "version": "1.2.0", "date": "2026-07-19T08:28:57.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/afdcf5d9bfc6b9ee40093860639e54095ab4798a51c3c116e72ae2ad6df0e475", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0", "date": "2026-07-19T08:28:07.000Z", "arch": "emscripten", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/9661f6ac70533fa1c203179a297b673b4d93f89ec358f49900de4a3bdaddf1cd", "status": "success", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.7.0", "os": "win", "version": "1.2.0", "date": "2026-07-19T08:27:35.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/c0a86b3c1327833b60112551d79d1f6ba3b51dd7a20d470c1469793ab2cbdd7d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.5.3", "os": "win", "version": "1.2.0", "date": "2026-07-19T08:27:13.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/b85f0af0c86de969fde0ed02018fb2361185b6743e9a15e67093d14588243473", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" }, { "r": "4.6.1", "os": "win", "version": "1.2.0", "date": "2026-07-19T08:27:27.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "https://r2.ropensci.org/401c613b742e1a5855a0e246a05f6e170da69ea75701697abaee54997aadcde3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/29679723777" } ] }