{ "_id": "6a351fd13efcd9bda43e3916", "Package": "ef", "Title": "Modelling Framework for the Estimation of Salmonid Abundance", "Version": "1.2.0", "Date": "2020-10-18", "Authors@R": "c(\nperson(\"Colin\", \"Millar\", role = c(\"aut\", \"cre\"),\nemail = \"colin.millar@ices.dk\"),\nperson(\"Rob\", \"Fryer\", role = \"aut\"),\nperson(\"Iain\", \"Malcolm\", role = \"aut\"),\nperson(\"Ross\", \"Glover\", role = \"aut\"),\nperson(\"Marine Scotland Science\", role = \"cph\"))", "Description": "A set of functions to estimate capture probabilities and\ndensities from multipass pass removal data.", "License": "MIT + file LICENSE", "LazyData": "TRUE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "Repository": "https://faskally.r-universe.dev", "Date/Publication": "2023-10-10 16:44:14 UTC", "RemoteUrl": "https://github.com/faskally/ef", "RemoteRef": "HEAD", "RemoteSha": "be649c27efc54f8176f404e6856fae04327141d6", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-19 10:47:38 UTC", "User": "root" }, "Author": "Colin Millar [aut, cre],\nRob Fryer [aut],\nIain Malcolm [aut],\nRoss Glover [aut],\nMarine Scotland Science [cph]", "Maintainer": "Colin Millar ", "MD5sum": "d06ac70d259e9fc2b3d6ad397896280d", "_user": "faskally", "_type": "src", "_file": "ef_1.2.0.tar.gz", "_fileid": "1639fd752f88fb2009302a759b659f5a84e863e3dd1afba992bf1bddd095f9ae", "_filesize": 118788, "_sha256": "1639fd752f88fb2009302a759b659f5a84e863e3dd1afba992bf1bddd095f9ae", "_created": "2026-06-19T10:47:38.000Z", "_published": "2026-06-19T10:54:09.242Z", "_distro": "noble", "_jobs": [ { "job": 82334576425, "time": 149, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7747906433" }, { "job": 82334576433, "time": 155, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7747907562" }, { "job": 82334576438, "time": 158, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7747909225" }, { "job": 82334576418, "time": 151, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7747906154" }, { "job": 82334576431, "time": 185, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7747906747" }, { "job": 82334576430, "time": 325, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "7747953409" }, { "job": 82334576420, "time": 195, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7747908520" }, { "job": 82334576399, "time": 259, "config": "macos-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7747934297" }, { "job": 82334028253, "time": 212, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7747858744" }, { "job": 82334576373, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7747893666" }, { "job": 82334576408, "time": 148, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7747905281" }, { "job": 82334576403, "time": 141, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7747903004" }, { "job": 82334576389, "time": 144, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7747903814" } ], "_buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/faskally/ef", "_commit": { "id": "be649c27efc54f8176f404e6856fae04327141d6", "author": "Colin Millar ", "committer": "Colin Millar ", "message": "fixed README and tests\n", "time": 1696956254 }, "_maintainer": { "name": "Colin Millar", "email": "colin.millar@ices.dk", "login": "colinpmillar", "description": "", "uuid": 1502848 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0", "role": "Depends" }, { "package": "TMB", "role": "Depends" }, { "package": "TMB", "role": "LinkingTo" }, { "package": "RcppEigen", "role": "LinkingTo" }, { "package": "Matrix", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "mgcv", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "faskally", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "colinpmillar", "count": 81, "uuid": 1502848 }, { "user": "iainmalcolm", "count": 27, "uuid": 20435495 } ], "_userbio": { "uuid": 11422870, "type": "organization", "name": "Faskally", "followers": 0, "description": "R packages developed at the Freshwater Fisheries Laboratory, Faskally" }, "_downloads": { "count": 222, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ef" }, "_devurl": "https://github.com/faskally/ef", "_searchresults": 10, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ef.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_realowner": "colinpmillar", "_cranurl": false, "_releases": [ { "version": "1.2.0", "date": "2020-11-03" } ], "_exports": [ "as.gam", "BICadj", "efp", "invlogit", "logit", "overdispersion", "transpar" ], "_datasets": [ { "name": "ef_data", "title": "Counts of salmon fry and parr from electrofishing.", "object": "ef_data", "class": [ "data.frame" ], "fields": [ "siteID", "year", "date", "EFpasscount", "pass", "species", "lifestage", "count", "area" ], "rows": 90, "table": true, "tojson": true } ], "_help": [ { "page": "ef-package", "title": "Modelling Framework for the Estimation of Salmonid Abundance in Scottish Rivers", "topics": [ "ef-package", "ef" ] }, { "page": "as.gam", "title": "Coversion of an efp fit to a gam fit for plotting", "topics": [ "as.gam" ] }, { "page": "BICadj", "title": "Adjusted BIC function", "topics": [ "BICadj" ] }, { "page": "ef_data", "title": "Counts of salmon fry and parr from electrofishing.", "topics": [ "ef_data" ] }, { "page": "efp", "title": "Estimate capture probabilites from electrofishing data", "topics": [ "efp" ] }, { "page": "invlogit", "title": "Inverse logistic transformation", "topics": [ "invlogit" ] }, { "page": "logit", "title": "Logistic transformation", "topics": [ "logit" ] }, { "page": "overdispersion", "title": "Estimating overdispersion", "topics": [ "overdispersion" ] }, { "page": "transpar", "title": "Utility function to convert parameters to probabilities", "topics": [ "transpar" ] } ], "_readme": "https://github.com/faskally/ef/raw/HEAD/README.md", "_rundeps": [ "cli", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "mgcv", "nlme", "pillar", "pkgconfig", "R6", "Rcpp", "RcppEigen", "rlang", "tibble", "tidyselect", "TMB", "utf8", "vctrs", "withr" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1.6989700043360187, "_indexed": false, "_nocasepkg": "ef", "_universes": [ "faskally" ], "_indexurl": "https://colinpmillar.r-universe.dev/ef", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-06-19T10:50:06.000Z", "distro": "noble", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "2af7e61fe9522b1d0e27f906d35c96f7f8b2af6a52def724fb996d311f779574", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.7.0", "os": "linux", "version": "1.2.0", "date": "2026-06-19T10:50:04.000Z", "distro": "noble", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "5e53eace8ade571306afd5ea399a4798b074c52f79b8eee21ff9a5d0f5486ddc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "linux", "version": "1.2.0", "date": "2026-06-19T10:50:13.000Z", "distro": "noble", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "04edf9084bdc93a77c717751ae8007aeeef8cd6c5d4f1aeee3195425013092b3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "linux", "version": "1.2.0", "date": "2026-06-19T10:50:01.000Z", "distro": "noble", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "f1b72db8d83edc8d1a4e9d8a7df5801e3bfa9cd43e5968e7faf395aa8aca50cb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-06-19T10:50:16.000Z", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "f72bcbc339973507524372d928b58f2fb11336a034b66352c2c2238cadcac7a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.5.3", "os": "mac", "version": "1.2.0", "date": "2026-06-19T10:51:56.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "9a8d1170605e4a55d6befff628fc2adaee5cc93ed3c01989bdfe4caa052d871e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "mac", "version": "1.2.0", "date": "2026-06-19T10:50:14.000Z", "arch": "aarch64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "91d5a03ca9733974565ba6aedba3b228ea19530955a96c94fcc89fbbb9fce3ec", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "mac", "version": "1.2.0", "date": "2026-06-19T10:51:03.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "86bc8e4426edb113f369378e21946dc9524e82994c3b6785ecfeea2e7cac85dd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.0", "date": "2026-06-19T10:50:03.000Z", "arch": "emscripten", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "a5e8a6bd3509fa908458032b084059b3863896fee31362e5bc349a72acf2be53", "status": "success", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.7.0", "os": "win", "version": "1.2.0", "date": "2026-06-19T10:49:25.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "dd1347b380ad45651e270b84ef011a1c8489cee98429391da7ccc724bfa0cfbd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.5.3", "os": "win", "version": "1.2.0", "date": "2026-06-19T10:49:15.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "d4e5a3ef6ecf8bcd29bbf31ff2f9f8d1d2be488836640eb2d55b98532debc60b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" }, { "r": "4.6.0", "os": "win", "version": "1.2.0", "date": "2026-06-19T10:49:15.000Z", "arch": "x86_64", "commit": "be649c27efc54f8176f404e6856fae04327141d6", "fileid": "f7962b8fd8e66dac73726f2b995fceae829c20849dc53c010053525ce3a59612", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/faskally/actions/runs/27821050796" } ] }