{
  "_id": "6a1ee31fb401979e73410e51",
  "Package": "ef",
  "Title": "Modelling Framework for the Estimation of Salmonid Abundance",
  "Version": "1.2.0",
  "Date": "2020-10-18",
  "Authors@R": "c(\nperson(\"Colin\", \"Millar\", role = c(\"aut\", \"cre\"),\nemail = \"colin.millar@ices.dk\"),\nperson(\"Rob\", \"Fryer\", role = \"aut\"),\nperson(\"Iain\", \"Malcolm\", role = \"aut\"),\nperson(\"Ross\", \"Glover\", role = \"aut\"),\nperson(\"Marine Scotland Science\", role = \"cph\"))",
  "Description": "A set of functions to estimate capture probabilities and\ndensities from multipass pass removal data.",
  "License": "MIT + file LICENSE",
  "LazyData": "TRUE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.3",
  "Repository": "https://faskally.r-universe.dev",
  "Date/Publication": "2023-10-10 16:44:14 UTC",
  "RemoteUrl": "https://github.com/faskally/ef",
  "RemoteRef": "HEAD",
  "RemoteSha": "be649c27efc54f8176f404e6856fae04327141d6",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-20 06:29:40 UTC",
    "User": "root"
  },
  "Author": "Colin Millar [aut, cre],\nRob Fryer [aut],\nIain Malcolm [aut],\nRoss Glover [aut],\nMarine Scotland Science [cph]",
  "Maintainer": "Colin Millar <colin.millar@ices.dk>",
  "MD5sum": "1dd40f86e6ec5f91610dbe31104a9db4",
  "_user": "faskally",
  "_type": "src",
  "_file": "ef_1.2.0.tar.gz",
  "_fileid": "effe2ad3c8c87585fc48c18a37a1c31c6314db5751b4449111e6e5dd9f39290e",
  "_filesize": 116755,
  "_sha256": "effe2ad3c8c87585fc48c18a37a1c31c6314db5751b4449111e6e5dd9f39290e",
  "_created": "2026-05-20T06:29:40.000Z",
  "_published": "2026-06-02T14:05:19.107Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79089499884,
      "time": 167,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7102859653"
    },
    {
      "job": 79089499191,
      "time": 162,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7102858619"
    },
    {
      "job": 79089500569,
      "time": 175,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102862030"
    },
    {
      "job": 79089500537,
      "time": 157,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102857219"
    },
    {
      "job": 79089499840,
      "time": 235,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7102867296"
    },
    {
      "job": 79089499881,
      "time": 298,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7102888292"
    },
    {
      "job": 79089499890,
      "time": 199,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102860574"
    },
    {
      "job": 79089500543,
      "time": 460,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102925736"
    },
    {
      "job": 79089499380,
      "time": 175,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102813720"
    },
    {
      "job": 79089498802,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7359979402"
    },
    {
      "job": 79089499782,
      "time": 158,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7102857401"
    },
    {
      "job": 79089500287,
      "time": 145,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7102853971"
    },
    {
      "job": 79089500261,
      "time": 203,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7102869126"
    }
  ],
  "_buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/faskally/ef",
  "_commit": {
    "id": "be649c27efc54f8176f404e6856fae04327141d6",
    "author": "Colin Millar <colinpmillar@gmail.com>",
    "committer": "Colin Millar <colinpmillar@gmail.com>",
    "message": "fixed README and tests\n",
    "time": 1696956254
  },
  "_maintainer": {
    "name": "Colin Millar",
    "email": "colin.millar@ices.dk",
    "login": "colinpmillar",
    "description": "",
    "uuid": 1502848
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.0",
      "role": "Depends"
    },
    {
      "package": "TMB",
      "role": "Depends"
    },
    {
      "package": "TMB",
      "role": "LinkingTo"
    },
    {
      "package": "RcppEigen",
      "role": "LinkingTo"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "mgcv",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "faskally",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "colinpmillar",
      "count": 81,
      "uuid": 1502848
    },
    {
      "user": "iainmalcolm",
      "count": 27,
      "uuid": 20435495
    }
  ],
  "_userbio": {
    "uuid": 11422870,
    "type": "organization",
    "name": "Faskally",
    "description": "R packages developed at the Freshwater Fisheries Laboratory, Faskally"
  },
  "_downloads": {
    "count": 207,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ef"
  },
  "_devurl": "https://github.com/faskally/ef",
  "_searchresults": 10,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ef.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "colinpmillar",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.2.0",
      "date": "2020-11-03"
    }
  ],
  "_exports": [
    "as.gam",
    "BICadj",
    "efp",
    "invlogit",
    "logit",
    "overdispersion",
    "transpar"
  ],
  "_datasets": [
    {
      "name": "ef_data",
      "title": "Counts of salmon fry and parr from electrofishing.",
      "object": "ef_data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "siteID",
        "year",
        "date",
        "EFpasscount",
        "pass",
        "species",
        "lifestage",
        "count",
        "area"
      ],
      "rows": 90,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "ef-package",
      "title": "Modelling Framework for the Estimation of Salmonid Abundance in Scottish Rivers",
      "topics": [
        "ef-package",
        "ef"
      ]
    },
    {
      "page": "as.gam",
      "title": "Coversion of an efp fit to a gam fit for plotting",
      "topics": [
        "as.gam"
      ]
    },
    {
      "page": "BICadj",
      "title": "Adjusted BIC function",
      "topics": [
        "BICadj"
      ]
    },
    {
      "page": "ef_data",
      "title": "Counts of salmon fry and parr from electrofishing.",
      "topics": [
        "ef_data"
      ]
    },
    {
      "page": "efp",
      "title": "Estimate capture probabilites from electrofishing data",
      "topics": [
        "efp"
      ]
    },
    {
      "page": "invlogit",
      "title": "Inverse logistic transformation",
      "topics": [
        "invlogit"
      ]
    },
    {
      "page": "logit",
      "title": "Logistic transformation",
      "topics": [
        "logit"
      ]
    },
    {
      "page": "overdispersion",
      "title": "Estimating overdispersion",
      "topics": [
        "overdispersion"
      ]
    },
    {
      "page": "transpar",
      "title": "Utility function to convert parameters to probabilities",
      "topics": [
        "transpar"
      ]
    }
  ],
  "_readme": "https://github.com/faskally/ef/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "dplyr",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "mgcv",
    "nlme",
    "pillar",
    "pkgconfig",
    "R6",
    "Rcpp",
    "RcppEigen",
    "rlang",
    "tibble",
    "tidyselect",
    "TMB",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 1.6989700043360187,
  "_indexed": false,
  "_nocasepkg": "ef",
  "_universes": [
    "faskally"
  ],
  "_indexurl": "https://colinpmillar.r-universe.dev/ef",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:18.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "78eb5a5eecfb51d700bf21e07f6955bf00bf2e423ae57c4b9f557f3042645ed5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:06.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "d5d3d64140f86a5aee7d84e39f0cd0f15640338dc2dd7b0e7d3f42ebba5c0c0c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:25.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "511f79ae7c9f46a683491bab13b8a7998a1a9bc16412e460a85f6991987edec6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:05.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "5abfc67a3e735797cf99c482425e3799dad1cd2dd230c6c1ee95fdb5ecf5a1e8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:38.000Z",
      "arch": "aarch64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "cf96f710d32f2992b9715ff27a18e79508d53e770a3d40128ec9f5deaf9600a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-05-20T06:33:35.000Z",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "d1f7eb46cd2624473a6a394f27fb405f50f652f5e0b80596347f3b570aad244b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-05-20T06:32:21.000Z",
      "arch": "aarch64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "2f88022a3c765b711c459957274e590a5db01ed917687f8e7611820196550828",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.0",
      "date": "2026-05-20T06:34:50.000Z",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "acb2207863da86a631a19137e976680fb8c502c9c9b71d1cfbec45cff96c1d15",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-05-20T06:31:31.000Z",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "524073d351d22c061bb1b8d9f511aa60b32529c46180877f2ad4340d198619d9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-05-20T06:31:16.000Z",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "324d207ca47684e7c1d9c5ec885d536090b3c9fbb498791626124952c225d602",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2.0",
      "date": "2026-05-20T06:31:47.000Z",
      "arch": "x86_64",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "141b30014da90e813af309f507366ed354d65f174b7289f6ce798d45080285a5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.0",
      "date": "2026-06-02T14:04:19.000Z",
      "arch": "emscripten",
      "commit": "be649c27efc54f8176f404e6856fae04327141d6",
      "fileid": "30f62101892792e920de1aa16ffde2a62b3beb04a1fe7189ae240f550c73afc1",
      "status": "success",
      "buildurl": "https://github.com/r-universe/faskally/actions/runs/26145459290"
    }
  ]
}